Variant report

Variant	rs7078172
Chromosome Location	chr10:27992950-27992951
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12246640	0.81[YRI][hapmap]
rs12257693	0.81[YRI][hapmap]
rs12263640	0.81[YRI][hapmap]
rs12265151	0.81[YRI][hapmap]
rs16928192	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2368248	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59506586	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59950033	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60014937	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60524104	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7078877	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7904322	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27985800-28001400	Weak transcription	Aorta	Aorta
2	chr10:27992000-28001400	Weak transcription	Ovary	ovary
3	chr10:27992200-28001600	Weak transcription	Stomach Smooth Muscle	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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