Variant report

Variant	rs595330
Chromosome Location	chr8:60938342-60938343
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1626773	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2622526	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs490409	0.88[ASN][1000 genomes]
rs544344	0.88[ASN][1000 genomes]
rs544416	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs548902	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs549730	0.88[ASN][1000 genomes]
rs562271	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs595819	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs601224	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs649886	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs674292	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs700726	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831331	chr8:60770382-60959633	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60938000-60940000	Enhancers	Primary B cells from peripheral blood	blood
2	chr8:60938200-60940000	ZNF genes & repeats	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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