Variant report

Variant	rs548902
Chromosome Location	chr8:60943129-60943130
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1626773	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2622526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2688656	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs475714	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs488934	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs490409	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs493713	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs497312	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs507158	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs510005	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs519500	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs533776	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs544344	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs544416	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs549730	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs574368	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs574929	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs594035	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs595330	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs595819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs598457	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs627807	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs642072	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs648946	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs649886	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs659506	0.87[EUR][1000 genomes]
rs666087	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs668563	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs671655	0.83[ASN][1000 genomes]
rs700726	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831331	chr8:60770382-60959633	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60940000-60968400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:60942400-60943600	Enhancers	Primary B cells from peripheral blood	blood
3	chr8:60943000-60943600	Enhancers	Primary B cells from cord blood	blood

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