Variant report

Variant	rs475714
Chromosome Location	chr8:60879822-60879823
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:60875870..60877485-chr8:60879560..60881950,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1497032	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2037561	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2622526	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2688656	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2688659	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs472799	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4737551	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs488934	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs490409	0.85[ASN][1000 genomes]
rs493713	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs497312	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs507158	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs510005	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs519500	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs522182	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs526249	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs533776	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs544344	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs544416	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs548902	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs549730	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs574368	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs574929	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs594035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs595819	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs598457	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs601224	0.84[ASN][1000 genomes]
rs606131	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs627807	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs642072	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6471843	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6471844	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs648946	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs659506	0.81[EUR][1000 genomes]
rs666087	0.81[EUR][1000 genomes]
rs668563	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs671655	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs674292	0.84[ASN][1000 genomes]
rs700726	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7832367	0.86[EUR][1000 genomes]
rs7845735	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831331	chr8:60770382-60959633	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60871600-60884800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr8:60878000-60880000	Weak transcription	GM12878-XiMat	blood
3	chr8:60879000-60881800	Enhancers	Primary B cells from cord blood	blood
4	chr8:60879600-60882400	Enhancers	Primary B cells from peripheral blood	blood

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