Variant report

Variant	rs6471844
Chromosome Location	chr8:60844600-60844601
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:60844306..60846738-chr8:60851041..60853636,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10092060	0.85[EUR][1000 genomes]
rs10096514	0.82[EUR][1000 genomes]
rs1034515	0.83[EUR][1000 genomes]
rs1034516	0.82[EUR][1000 genomes]
rs12676407	0.81[ASN][1000 genomes]
rs13252402	0.85[EUR][1000 genomes]
rs13252902	0.83[EUR][1000 genomes]
rs1497032	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1511027	0.83[EUR][1000 genomes]
rs1955227	0.81[ASN][1000 genomes]
rs2037561	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2326444	0.81[EUR][1000 genomes]
rs2688659	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4257994	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4354297	0.82[EUR][1000 genomes]
rs472799	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4737551	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs475714	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs488934	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs493713	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs522182	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs526249	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs533776	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs574368	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs574929	0.81[EUR][1000 genomes]
rs594035	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs598457	0.84[EUR][1000 genomes]
rs606131	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs627807	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs642072	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6471818	0.84[EUR][1000 genomes]
rs6471819	0.82[EUR][1000 genomes]
rs6471820	0.82[EUR][1000 genomes]
rs6471843	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6471845	0.84[ASN][1000 genomes]
rs668563	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs671655	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6982408	0.81[EUR][1000 genomes]
rs6984918	0.84[ASN][1000 genomes]
rs6997129	0.83[EUR][1000 genomes]
rs7017889	0.82[EUR][1000 genomes]
rs7832367	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7836012	0.83[EUR][1000 genomes]
rs7836602	0.81[EUR][1000 genomes]
rs7845735	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831331	chr8:60770382-60959633	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60835000-60844600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr8:60842800-60845000	Enhancers	Stomach Smooth Muscle	stomach
3	chr8:60843200-60846000	Enhancers	Colon Smooth Muscle	Colon
4	chr8:60843800-60845200	Enhancers	Fetal Stomach	stomach
5	chr8:60844000-60845000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr8:60844000-60845400	Enhancers	Ovary	ovary
7	chr8:60844000-60845800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr8:60844400-60845000	Enhancers	Hela-S3	cervix
9	chr8:60844400-60845400	Enhancers	Fetal Lung	lung
10	chr8:60844400-60846000	Enhancers	NHLF	lung
11	chr8:60844600-60845000	Enhancers	Rectal Smooth Muscle	rectum
12	chr8:60844600-60845200	Enhancers	Duodenum Smooth Muscle	Duodenum
13	chr8:60844600-60845200	Enhancers	Rectal Mucosa Donor 31	rectum

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