Variant report

Variant	rs10092060
Chromosome Location	chr8:60711404-60711405
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:60699554..60701711-chr8:60710217..60711758,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10096514	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1034515	0.97[EUR][1000 genomes]
rs1034516	0.96[EUR][1000 genomes]
rs12545845	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12549329	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13252402	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13252902	0.97[EUR][1000 genomes]
rs1497032	0.85[EUR][1000 genomes]
rs1511026	0.91[EUR][1000 genomes]
rs1511027	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2203040	0.92[EUR][1000 genomes]
rs2326443	0.83[EUR][1000 genomes]
rs2326444	0.95[EUR][1000 genomes]
rs2688659	0.81[EUR][1000 genomes]
rs4305887	0.92[EUR][1000 genomes]
rs4354297	0.97[EUR][1000 genomes]
rs4737551	0.86[EUR][1000 genomes]
rs522182	0.82[EUR][1000 genomes]
rs526249	0.81[EUR][1000 genomes]
rs6471803	0.83[EUR][1000 genomes]
rs6471818	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6471819	0.97[EUR][1000 genomes]
rs6471820	0.97[EUR][1000 genomes]
rs6471843	0.85[EUR][1000 genomes]
rs6471844	0.85[EUR][1000 genomes]
rs6982408	0.95[EUR][1000 genomes]
rs6983076	0.92[EUR][1000 genomes]
rs6984242	0.85[EUR][1000 genomes]
rs6988338	0.83[EUR][1000 genomes]
rs6997129	0.97[EUR][1000 genomes]
rs6999126	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7017889	0.97[EUR][1000 genomes]
rs7832367	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7835908	0.83[EUR][1000 genomes]
rs7836012	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7836602	0.95[EUR][1000 genomes]
rs7845735	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030564	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv539630	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10092060	LOC643763	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60710800-60711600	Enhancers	GM12878-XiMat	blood
2	chr8:60710800-60711800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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