Variant report

Variant	rs2326444
Chromosome Location	chr8:60674050-60674051
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10092060	0.95[EUR][1000 genomes]
rs10096514	0.97[EUR][1000 genomes]
rs1034515	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1034516	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12334344	0.82[ASN][1000 genomes]
rs12545845	0.90[EUR][1000 genomes]
rs12549329	0.93[EUR][1000 genomes]
rs13252402	0.95[EUR][1000 genomes]
rs13252902	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1497032	0.81[EUR][1000 genomes]
rs1511026	0.93[EUR][1000 genomes]
rs1511027	0.97[EUR][1000 genomes]
rs2203040	0.94[EUR][1000 genomes]
rs2326443	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28590033	0.85[ASN][1000 genomes]
rs4305887	0.94[EUR][1000 genomes]
rs4354297	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4737551	0.81[EUR][1000 genomes]
rs55641496	0.85[ASN][1000 genomes]
rs57114745	0.85[ASN][1000 genomes]
rs60587092	0.85[ASN][1000 genomes]
rs62506401	0.84[ASN][1000 genomes]
rs6471803	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6471818	0.95[EUR][1000 genomes]
rs6471819	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6471820	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6471843	0.81[EUR][1000 genomes]
rs6471844	0.81[EUR][1000 genomes]
rs6651299	0.84[ASN][1000 genomes]
rs6982408	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6983076	0.94[EUR][1000 genomes]
rs6984242	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6988338	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6997129	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6999126	0.94[EUR][1000 genomes]
rs7017889	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7832367	0.86[EUR][1000 genomes]
rs7835908	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7836012	0.97[EUR][1000 genomes]
rs7836602	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7845735	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030564	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv539630	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv890942	chr8:60639357-60686330	Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60670800-60674400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:60672200-60674600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links