Variant report

Variant	rs4737551
Chromosome Location	chr8:60835669-60835670
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10092060	0.86[EUR][1000 genomes]
rs10096514	0.82[EUR][1000 genomes]
rs1034515	0.84[EUR][1000 genomes]
rs1034516	0.83[EUR][1000 genomes]
rs13252402	0.86[EUR][1000 genomes]
rs13252902	0.84[EUR][1000 genomes]
rs1497032	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1511027	0.83[EUR][1000 genomes]
rs2037561	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2326444	0.81[EUR][1000 genomes]
rs2688659	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4257994	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4354297	0.83[EUR][1000 genomes]
rs472799	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs475714	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs488934	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs493713	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs522182	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs526249	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs533776	0.82[EUR][1000 genomes]
rs574368	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs594035	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs598457	0.83[EUR][1000 genomes]
rs606131	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs627807	0.82[EUR][1000 genomes]
rs642072	0.82[EUR][1000 genomes]
rs6471818	0.85[EUR][1000 genomes]
rs6471819	0.83[EUR][1000 genomes]
rs6471820	0.83[EUR][1000 genomes]
rs6471843	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6471844	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs668563	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs671655	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6982408	0.81[EUR][1000 genomes]
rs6997129	0.84[EUR][1000 genomes]
rs6999126	0.80[EUR][1000 genomes]
rs7017889	0.83[EUR][1000 genomes]
rs7832367	0.81[AFR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7836012	0.83[EUR][1000 genomes]
rs7836602	0.81[EUR][1000 genomes]
rs7845735	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831331	chr8:60770382-60959633	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4737551	LOC643763	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60835000-60835800	Weak transcription	Colon Smooth Muscle	Colon
2	chr8:60835000-60844600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr8:60835600-60835800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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