Variant report

Variant	rs7832367
Chromosome Location	chr8:60779648-60779649
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10092060	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10096514	0.87[EUR][1000 genomes]
rs1034515	0.88[EUR][1000 genomes]
rs1034516	0.87[EUR][1000 genomes]
rs12545845	0.82[EUR][1000 genomes]
rs12549329	0.82[EUR][1000 genomes]
rs13252402	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13252902	0.88[EUR][1000 genomes]
rs1497032	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1511026	0.82[EUR][1000 genomes]
rs1511027	0.88[EUR][1000 genomes]
rs2037561	0.86[EUR][1000 genomes]
rs2203040	0.83[EUR][1000 genomes]
rs2326444	0.86[EUR][1000 genomes]
rs2688659	0.88[EUR][1000 genomes]
rs4305887	0.83[EUR][1000 genomes]
rs4354297	0.88[EUR][1000 genomes]
rs472799	0.87[EUR][1000 genomes]
rs4737551	0.81[AFR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs475714	0.86[EUR][1000 genomes]
rs488934	0.82[EUR][1000 genomes]
rs493713	0.85[EUR][1000 genomes]
rs522182	0.89[EUR][1000 genomes]
rs526249	0.88[EUR][1000 genomes]
rs574368	0.87[EUR][1000 genomes]
rs594035	0.86[EUR][1000 genomes]
rs606131	0.86[EUR][1000 genomes]
rs6471818	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6471819	0.88[EUR][1000 genomes]
rs6471820	0.88[EUR][1000 genomes]
rs6471843	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6471844	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs668563	0.87[EUR][1000 genomes]
rs671655	0.87[EUR][1000 genomes]
rs6982408	0.86[EUR][1000 genomes]
rs6983076	0.83[EUR][1000 genomes]
rs6997129	0.88[EUR][1000 genomes]
rs6999126	0.83[EUR][1000 genomes]
rs7017889	0.88[EUR][1000 genomes]
rs7836012	0.88[EUR][1000 genomes]
rs7836602	0.86[EUR][1000 genomes]
rs7845735	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831331	chr8:60770382-60959633	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7832367	LOC643763	cis	parietal	SCAN
rs7832367	ZNF446	trans	brain	seeQTL
rs7832367	MEGF6	trans	brain	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60775800-60781600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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