Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10092060	0.92[EUR][1000 genomes]
rs10096514	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1034515	0.91[EUR][1000 genomes]
rs1034516	0.90[EUR][1000 genomes]
rs10957105	0.88[ASN][1000 genomes]
rs12545845	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12549329	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13252402	0.92[EUR][1000 genomes]
rs13252902	0.91[EUR][1000 genomes]
rs1511026	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1511027	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2203040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2326443	0.82[EUR][1000 genomes]
rs2326444	0.94[EUR][1000 genomes]
rs28498065	0.88[ASN][1000 genomes]
rs28572408	0.88[ASN][1000 genomes]
rs4305887	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4354297	0.92[EUR][1000 genomes]
rs6471803	0.82[EUR][1000 genomes]
rs6471818	0.92[EUR][1000 genomes]
rs6471819	0.92[EUR][1000 genomes]
rs6471820	0.92[EUR][1000 genomes]
rs6982408	0.94[EUR][1000 genomes]
rs6988338	0.82[EUR][1000 genomes]
rs6997129	0.91[EUR][1000 genomes]
rs6999126	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7017889	0.92[EUR][1000 genomes]
rs7832367	0.83[EUR][1000 genomes]
rs7835908	0.82[EUR][1000 genomes]
rs7836012	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7836602	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030564	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv539630	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6983076	LOC643763	cis	parietal	SCAN
rs6983076	UBXN2B	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60621400-60626000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr8:60622200-60626000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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