Variant report

Variant	rs6471803
Chromosome Location	chr8:60667231-60667232
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10092060	0.83[EUR][1000 genomes]
rs10096514	0.85[EUR][1000 genomes]
rs1034515	0.86[EUR][1000 genomes]
rs1034516	0.85[EUR][1000 genomes]
rs12334344	0.80[ASN][1000 genomes]
rs12549329	0.82[EUR][1000 genomes]
rs13252402	0.83[EUR][1000 genomes]
rs13252902	0.86[EUR][1000 genomes]
rs1511026	0.82[EUR][1000 genomes]
rs1511027	0.85[EUR][1000 genomes]
rs2203040	0.82[EUR][1000 genomes]
rs2326443	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2326444	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28590033	0.83[ASN][1000 genomes]
rs4305887	0.82[EUR][1000 genomes]
rs4354297	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55641496	0.83[ASN][1000 genomes]
rs57114745	0.83[ASN][1000 genomes]
rs60587092	0.83[ASN][1000 genomes]
rs62506401	0.82[ASN][1000 genomes]
rs6471818	0.83[EUR][1000 genomes]
rs6471819	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6471820	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6651299	0.82[ASN][1000 genomes]
rs6982408	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6983076	0.82[EUR][1000 genomes]
rs6984242	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6986251	0.87[CEU][hapmap]
rs6988338	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6997129	0.86[EUR][1000 genomes]
rs6999126	0.83[EUR][1000 genomes]
rs7017889	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7835908	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7836012	0.85[EUR][1000 genomes]
rs7836602	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030564	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv539630	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv890942	chr8:60639357-60686330	Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv526889	chr8:60656194-60667231	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6471803	LOC643763	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60666600-60667600	Weak transcription	Fetal Brain Female	brain

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