Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr8:60668113-60668264	K562	blood:	n/a	chr8:60668207-60668214 chr8:60668204-60668217 chr8:60668205-60668218
2	SPI1	chr8:60668062-60668455	HL-60	blood:	n/a	chr8:60668207-60668214 chr8:60668204-60668217 chr8:60668205-60668218

Variant related genes	Relation type
ENSG00000253413	TF binding region

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12334344	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12549153	0.86[EUR][1000 genomes]
rs1588499	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16925109	0.92[EUR][1000 genomes]
rs16925119	0.92[EUR][1000 genomes]
rs2326443	0.85[ASN][1000 genomes]
rs2326444	0.85[ASN][1000 genomes]
rs28590033	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4354297	0.80[ASN][1000 genomes]
rs4629854	0.86[EUR][1000 genomes]
rs4644228	0.92[EUR][1000 genomes]
rs55641496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56394800	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57114745	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62504703	0.92[EUR][1000 genomes]
rs62504733	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62506400	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62506401	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6471803	0.83[ASN][1000 genomes]
rs6471819	0.80[ASN][1000 genomes]
rs6471820	0.80[ASN][1000 genomes]
rs6651299	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6982408	0.85[ASN][1000 genomes]
rs6984242	0.80[ASN][1000 genomes]
rs6988338	0.85[ASN][1000 genomes]
rs7017889	0.80[ASN][1000 genomes]
rs72655599	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7835908	0.84[ASN][1000 genomes]
rs7836602	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030564	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv539630	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv890942	chr8:60639357-60686330	Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60667600-60668800	Enhancers	Fetal Brain Female	brain
2	chr8:60667800-60669000	Enhancers	Fetal Brain Male	brain
3	chr8:60668000-60668200	Weak transcription	Pancreas	Pancrea

Quick Search: