Variant report

Variant	rs16925109
Chromosome Location	chr8:60582882-60582883
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:60581730..60584426-chr8:60598883..60600498,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs12234974	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12334344	0.92[EUR][1000 genomes]
rs12549153	0.94[EUR][1000 genomes]
rs1588499	0.94[EUR][1000 genomes]
rs16925042	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16925062	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16925069	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16925089	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16925094	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16925119	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28590033	0.92[EUR][1000 genomes]
rs3857968	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4321990	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4460359	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4518650	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4629854	0.94[EUR][1000 genomes]
rs4644228	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55641496	0.92[EUR][1000 genomes]
rs56188656	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56394800	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57114745	0.92[EUR][1000 genomes]
rs57310682	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs60064130	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60587092	0.92[EUR][1000 genomes]
rs62504688	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62504689	0.83[EUR][1000 genomes]
rs62504703	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62504733	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62506400	0.93[EUR][1000 genomes]
rs62506401	0.90[EUR][1000 genomes]
rs6651299	0.92[EUR][1000 genomes]
rs6986251	0.86[JPT][hapmap]
rs6990562	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7003175	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72655569	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72655570	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72655578	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72655599	0.94[EUR][1000 genomes]
rs7842002	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9643511	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9792187	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030564	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv539630	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60582800-60583400	Enhancers	Pancreatic Islets	Pancreatic Islet

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