Variant report

Variant	rs9643511
Chromosome Location	chr8:60543992-60543993
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:60536802..60538571-chr8:60542161..60544626,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12234974	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16925042	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16925062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16925069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16925089	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16925094	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16925109	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16925119	0.83[EUR][1000 genomes]
rs3857968	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4321990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4460359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4501567	0.94[EUR][1000 genomes]
rs4518650	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4644228	0.83[EUR][1000 genomes]
rs56188656	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57310682	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60064130	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62504688	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62504689	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62504693	0.94[EUR][1000 genomes]
rs62504703	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6986251	0.86[JPT][hapmap]
rs6990562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6996733	0.84[EUR][1000 genomes]
rs7003175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72655569	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72655570	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72655578	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7814268	0.90[EUR][1000 genomes]
rs7842002	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9792187	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030564	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv539630	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60539800-60546800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr8:60541200-60545000	Enhancers	Primary hematopoietic stem cells	blood
3	chr8:60541400-60545000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr8:60542000-60544400	Enhancers	Colon Smooth Muscle	Colon
5	chr8:60542400-60544400	Enhancers	HUVEC	blood vessel
6	chr8:60542600-60545200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr8:60542600-60545800	Enhancers	Rectal Smooth Muscle	rectum
8	chr8:60542800-60544000	Enhancers	Fetal Lung	lung
9	chr8:60542800-60544200	Enhancers	Hela-S3	cervix
10	chr8:60543000-60545000	Enhancers	Osteobl	bone
11	chr8:60543200-60544000	Enhancers	Fetal Brain Male	brain
12	chr8:60543200-60544000	Flanking Active TSS	NHDF-Ad	bronchial
13	chr8:60543200-60544200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr8:60543200-60544600	Enhancers	NH-A	brain
15	chr8:60543200-60547600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr8:60543400-60544000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr8:60543400-60545800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr8:60543400-60546000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr8:60543600-60544400	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr8:60543800-60544400	Enhancers	Muscle Satellite Cultured Cells	--
21	chr8:60543800-60544400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr8:60543800-60544600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr8:60543800-60544800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr8:60543800-60545000	Enhancers	Pancreatic Islets	Pancreatic Islet

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