Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:60568004..60570387-chr8:60577772..60580644,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10107875	0.90[ASN][1000 genomes]
rs10957102	0.92[ASN][1000 genomes]
rs12234974	0.89[EUR][1000 genomes]
rs12549153	0.84[EUR][1000 genomes]
rs12549965	0.90[ASN][1000 genomes]
rs16925042	0.94[EUR][1000 genomes]
rs16925062	0.94[EUR][1000 genomes]
rs16925069	0.94[EUR][1000 genomes]
rs16925089	0.94[EUR][1000 genomes]
rs16925094	0.94[EUR][1000 genomes]
rs3857968	0.94[EUR][1000 genomes]
rs4321990	0.94[EUR][1000 genomes]
rs4342576	0.83[ASN][1000 genomes]
rs4460359	0.94[EUR][1000 genomes]
rs4518650	0.94[EUR][1000 genomes]
rs4629854	0.84[EUR][1000 genomes]
rs4737547	0.83[ASN][1000 genomes]
rs56188656	0.94[EUR][1000 genomes]
rs57310682	0.94[EUR][1000 genomes]
rs60064130	0.94[EUR][1000 genomes]
rs62504688	0.94[EUR][1000 genomes]
rs62504689	0.94[EUR][1000 genomes]
rs62504693	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6471795	0.82[ASN][1000 genomes]
rs6982265	0.90[ASN][1000 genomes]
rs6983204	0.83[ASN][1000 genomes]
rs6990562	0.94[EUR][1000 genomes]
rs6990717	0.88[ASN][1000 genomes]
rs6996733	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7003175	0.94[EUR][1000 genomes]
rs7008068	0.90[ASN][1000 genomes]
rs7014422	0.83[ASN][1000 genomes]
rs72655569	0.94[EUR][1000 genomes]
rs72655570	0.92[EUR][1000 genomes]
rs72655578	0.94[EUR][1000 genomes]
rs7814268	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7828085	0.83[ASN][1000 genomes]
rs7828435	0.86[ASN][1000 genomes]
rs7842002	0.94[EUR][1000 genomes]
rs9643511	0.94[EUR][1000 genomes]
rs9792187	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030564	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv539630	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs4501567	RPS20	cis	parietal	SCAN
rs4501567	CA8	cis	parietal	SCAN
rs4501567	YTHDF3	cis	parietal	SCAN
rs4501567	IMPAD1	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60564400-60569800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr8:60568200-60568800	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
3	chr8:60568400-60569400	Active TSS	Primary T cells fromperipheralblood	blood

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