Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10107875	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10957102	0.98[ASN][1000 genomes]
rs12547681	0.94[EUR][1000 genomes]
rs12549965	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28679689	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4342576	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4501567	0.90[ASN][1000 genomes]
rs4737547	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62504693	0.91[ASN][1000 genomes]
rs6471795	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6982265	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6983204	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6986251	0.92[CEU][hapmap]
rs6990717	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6996733	0.92[ASN][1000 genomes]
rs7014422	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7814268	0.90[ASN][1000 genomes]
rs7828085	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7828435	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7838646	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029441	chr8:60099776-60539141	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539629	chr8:60099776-60539141	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1030564	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv539630	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60526000-60532400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:60528600-60531400	Enhancers	HUVEC	blood vessel
3	chr8:60528800-60531200	Enhancers	Fetal Stomach	stomach
4	chr8:60529000-60531000	Enhancers	Rectal Smooth Muscle	rectum
5	chr8:60529400-60531000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr8:60529400-60532400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr8:60529400-60532400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr8:60529600-60531000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr8:60529600-60531000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr8:60529800-60531400	Enhancers	Fetal Lung	lung
11	chr8:60530200-60531000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr8:60530200-60531000	Active TSS	Stomach Smooth Muscle	stomach
13	chr8:60530200-60531200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr8:60530400-60531200	Enhancers	Colon Smooth Muscle	Colon
15	chr8:60530800-60532400	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr8:60530800-60532600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr8:60530800-60533000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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