Variant report

Variant	rs6982265
Chromosome Location	chr8:60529722-60529723
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10107875	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10957102	0.98[ASN][1000 genomes]
rs12547681	0.93[EUR][1000 genomes]
rs12549965	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28679689	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4342576	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4501567	0.90[ASN][1000 genomes]
rs4737547	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62504693	0.91[ASN][1000 genomes]
rs6471795	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6983204	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6986251	0.92[CEU][hapmap]
rs6990717	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6996733	0.92[ASN][1000 genomes]
rs7008068	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7014422	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7814268	0.90[ASN][1000 genomes]
rs7828085	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7828435	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7838646	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029441	chr8:60099776-60539141	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539629	chr8:60099776-60539141	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1030564	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv539630	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60526000-60532400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:60526200-60529800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr8:60526400-60529800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr8:60528400-60530000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr8:60528600-60531400	Enhancers	HUVEC	blood vessel
6	chr8:60528800-60530800	Enhancers	Fetal Heart	heart
7	chr8:60528800-60531200	Enhancers	Fetal Stomach	stomach
8	chr8:60529000-60530200	Enhancers	GM12878-XiMat	blood
9	chr8:60529000-60530600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr8:60529000-60530800	Enhancers	NH-A	brain
11	chr8:60529000-60531000	Enhancers	Rectal Smooth Muscle	rectum
12	chr8:60529200-60529800	Enhancers	Colon Smooth Muscle	Colon
13	chr8:60529200-60530400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr8:60529200-60530400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr8:60529200-60530400	Enhancers	Osteobl	bone
16	chr8:60529400-60529800	Weak transcription	Fetal Lung	lung
17	chr8:60529400-60530200	Weak transcription	Stomach Smooth Muscle	stomach
18	chr8:60529400-60530600	Enhancers	Hela-S3	cervix
19	chr8:60529400-60531000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr8:60529400-60532400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr8:60529400-60532400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr8:60529600-60530400	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr8:60529600-60530600	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr8:60529600-60530600	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr8:60529600-60530600	Enhancers	NHDF-Ad	bronchial
26	chr8:60529600-60530800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr8:60529600-60530800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr8:60529600-60531000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
29	chr8:60529600-60531000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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