Variant report

Variant	rs62504688
Chromosome Location	chr8:60534026-60534027
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12234974	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16925042	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16925062	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16925069	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16925089	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16925094	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16925109	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16925119	0.83[EUR][1000 genomes]
rs3857968	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4321990	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4460359	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4501567	0.94[EUR][1000 genomes]
rs4518650	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4644228	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56188656	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57310682	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60064130	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62504689	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62504693	0.94[EUR][1000 genomes]
rs62504703	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62506400	1.00[AFR][1000 genomes]
rs6990562	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6996733	0.84[EUR][1000 genomes]
rs7003175	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72655569	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72655570	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72655578	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7814268	0.90[EUR][1000 genomes]
rs7842002	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9643511	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9792187	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029441	chr8:60099776-60539141	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539629	chr8:60099776-60539141	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1030564	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv539630	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60531000-60536400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr8:60531200-60534600	Weak transcription	Colon Smooth Muscle	Colon
3	chr8:60533000-60536200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr8:60533000-60537000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr8:60533000-60538000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr8:60533000-60541200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr8:60533800-60536400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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