Variant report

Variant	rs1588499
Chromosome Location	chr8:60641607-60641608
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12334344	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12549153	0.89[EUR][1000 genomes]
rs16925109	0.94[EUR][1000 genomes]
rs16925119	0.94[EUR][1000 genomes]
rs28590033	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4629854	0.89[EUR][1000 genomes]
rs4644228	0.94[EUR][1000 genomes]
rs55641496	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56394800	0.98[EUR][1000 genomes]
rs57114745	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60587092	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62504703	0.94[EUR][1000 genomes]
rs62504733	0.96[EUR][1000 genomes]
rs62506400	0.99[EUR][1000 genomes]
rs62506401	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6651299	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72655599	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030564	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv539630	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv890942	chr8:60639357-60686330	Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3444104	chr8:60641231-60641682	Enhancers	n/a	n/a	inside rSNPs	diseases
5	esv3485513	chr8:60641250-60641609	Enhancers	n/a	n/a	inside rSNPs	diseases
6	esv3324168	chr8:60641263-60641640	Enhancers	n/a	n/a	inside rSNPs	diseases
7	esv3485511	chr8:60641318-60641620	Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60640800-60642000	Enhancers	Primary B cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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