Variant report

Variant	rs72655599
Chromosome Location	chr8:60650321-60650322
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12334344	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12549153	0.89[EUR][1000 genomes]
rs1588499	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16925109	0.94[EUR][1000 genomes]
rs16925119	0.94[EUR][1000 genomes]
rs28590033	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4629854	0.89[EUR][1000 genomes]
rs4644228	0.94[EUR][1000 genomes]
rs55641496	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56394800	0.98[EUR][1000 genomes]
rs57114745	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60587092	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62504703	0.94[EUR][1000 genomes]
rs62504733	0.96[EUR][1000 genomes]
rs62506400	0.99[EUR][1000 genomes]
rs62506401	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6651299	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030564	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv539630	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv890942	chr8:60639357-60686330	Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60649600-60651200	Enhancers	Primary B cells from cord blood	blood
2	chr8:60650000-60650800	Enhancers	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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