Variant report

Variant	rs62504733
Chromosome Location	chr8:60611472-60611473
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12334344	0.94[EUR][1000 genomes]
rs12549153	0.87[EUR][1000 genomes]
rs1588499	0.96[EUR][1000 genomes]
rs16925109	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16925119	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28590033	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4629854	0.87[EUR][1000 genomes]
rs4644228	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55641496	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56394800	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57114745	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60587092	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62504703	0.93[EUR][1000 genomes]
rs62506400	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62506401	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6651299	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72655599	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030564	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv539630	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60609400-60611600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:60610800-60611800	Weak transcription	Colon Smooth Muscle	Colon
3	chr8:60611400-60612200	Enhancers	Rectal Smooth Muscle	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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