Variant report
| Variant | rs56394800 |
|---|---|
| Chromosome Location | chr8:60605208-60605209 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:60568709..60570705-chr8:60604991..60607479,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs12334344 | 0.95[EUR][1000 genomes] |
| rs12549153 | 0.89[EUR][1000 genomes] |
| rs1588499 | 0.98[EUR][1000 genomes] |
| rs16925109 | 1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs16925119 | 0.94[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs28590033 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4629854 | 0.89[EUR][1000 genomes] |
| rs4644228 | 0.86[AFR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs55641496 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs57114745 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs60587092 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs62504703 | 0.94[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs62504733 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs62506400 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs62506401 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs6651299 | 0.80[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs72655599 | 0.98[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1030564 | chr8:60445016-60752655 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv539630 | chr8:60445016-60752655 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:60601800-60606200 | Weak transcription | Fetal Stomach | stomach |
