Variant report

Variant	rs59533684
Chromosome Location	chr7:144909747-144909748
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs57833858	1.00[AMR][1000 genomes]
rs59940138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60516347	1.00[AMR][1000 genomes]
rs6979139	1.00[AMR][1000 genomes]
rs73449914	1.00[AMR][1000 genomes]
rs73466057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73466060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73466062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031071	chr7:144318082-145125392	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv539169	chr7:144318082-145125392	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv831179	chr7:144830077-144998851	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1026420	chr7:144902627-145020612	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:144908000-144910000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:144908000-144910000	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr7:144909000-144910200	Enhancers	Adipose Nuclei	Adipose
4	chr7:144909000-144910400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr7:144909400-144910000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr7:144909400-144910200	Enhancers	Brain Angular Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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