Variant report

Variant	rs60516347
Chromosome Location	chr7:144922381-144922382
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs57833858	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59533684	1.00[AMR][1000 genomes]
rs59940138	1.00[AMR][1000 genomes]
rs6979139	1.00[AMR][1000 genomes]
rs73449914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73466057	1.00[AMR][1000 genomes]
rs73466060	1.00[AMR][1000 genomes]
rs73466062	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031071	chr7:144318082-145125392	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv539169	chr7:144318082-145125392	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv831179	chr7:144830077-144998851	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1026420	chr7:144902627-145020612	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv3506044	chr7:144915719-144922517	Enhancers	n/a	n/a	inside rSNPs	diseases
6	esv3506043	chr7:144916169-144922467	Enhancers	n/a	n/a	inside rSNPs	diseases
7	nsv608915	chr7:144917817-144923298	Enhancers	n/a	n/a	inside rSNPs	diseases
8	nsv608918	chr7:144918207-144923298	Enhancers	n/a	n/a	inside rSNPs	diseases
9	nsv608921	chr7:144919485-144923298	Enhancers	n/a	n/a	inside rSNPs	diseases
10	nsv608924	chr7:144920025-144923298	Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:144921000-144923000	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr7:144921200-144922400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:144921600-144922800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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