Variant report

Variant	rs59551907
Chromosome Location	chr11:66954546-66954547
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10896166	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11819783	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11825943	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12288048	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12785732	0.84[AMR][1000 genomes]
rs12788405	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12790040	0.87[AFR][1000 genomes]
rs12791853	0.86[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs35247976	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35992831	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs36085596	0.94[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs66466718	0.85[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs66603590	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73493541	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66907800-66975000	Weak transcription	Pancreas	Pancrea
2	chr11:66918800-66968000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:66926000-66966800	Weak transcription	Brain Angular Gyrus	brain
4	chr11:66926200-66963800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr11:66930800-66985600	Weak transcription	Small Intestine	intestine
6	chr11:66936400-66956000	Weak transcription	Fetal Heart	heart
7	chr11:66936400-67006200	Weak transcription	Stomach Mucosa	stomach
8	chr11:66942400-66955000	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr11:66942600-66982800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr11:66942800-66961000	Weak transcription	Gastric	stomach
11	chr11:66944000-66961200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:66945000-66956200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr11:66945000-66956600	Strong transcription	Primary B cells from peripheral blood	blood
14	chr11:66945000-66956800	Strong transcription	Dnd41	blood
15	chr11:66945000-66957000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr11:66945200-66955000	Strong transcription	Primary B cells from cord blood	blood
17	chr11:66945800-66984800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr11:66946400-66955400	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr11:66947000-66954600	Strong transcription	Osteobl	bone
20	chr11:66947000-66955600	Strong transcription	Primary T cells fromperipheralblood	blood
21	chr11:66947000-66956400	Strong transcription	GM12878-XiMat	blood
22	chr11:66947000-66964000	Strong transcription	Fetal Thymus	thymus
23	chr11:66947200-66954600	Strong transcription	Primary T helper cells PMA-I stimulated	--
24	chr11:66947200-66954800	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr11:66947200-66957200	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr11:66947200-66957600	Strong transcription	Primary neutrophils fromperipheralblood	blood
27	chr11:66947200-66958400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr11:66947200-66959400	Strong transcription	Placenta	Placenta
29	chr11:66947400-66954600	Strong transcription	Duodenum Mucosa	Duodenum
30	chr11:66947400-66954800	Strong transcription	Muscle Satellite Cultured Cells	--
31	chr11:66947400-66955000	Strong transcription	HUES6 Cell Line	embryonic stem cell
32	chr11:66947400-66955000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr11:66947400-66955000	Strong transcription	HSMM	muscle
34	chr11:66947400-66955600	Strong transcription	Stomach Smooth Muscle	stomach
35	chr11:66947400-66956400	Strong transcription	Fetal Lung	lung
36	chr11:66947400-66956600	Strong transcription	HMEC	breast
37	chr11:66947400-66957000	Strong transcription	Rectal Mucosa Donor 31	rectum
38	chr11:66947400-66958000	Strong transcription	Fetal Intestine Large	intestine
39	chr11:66947600-66958200	Strong transcription	Fetal Muscle Trunk	muscle
40	chr11:66947600-66958600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr11:66947600-66963000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr11:66948000-66954600	Strong transcription	HSMMtube	muscle
43	chr11:66948000-66970600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr11:66948200-66962000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr11:66948200-66975000	Weak transcription	Right Ventricle	heart
46	chr11:66948200-66986400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr11:66948400-66954800	Strong transcription	NHDF-Ad	bronchial
48	chr11:66948400-66955000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr11:66948800-66958800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr11:66949000-66954600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

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