Variant report

Variant	rs11825943
Chromosome Location	chr11:66875371-66875372
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11819880	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11827639	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12785732	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12788405	0.94[AMR][1000 genomes]
rs1790731	0.83[EUR][1000 genomes]
rs35247976	0.89[AMR][1000 genomes]
rs35992831	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs36085596	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59551907	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs66603590	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73493541	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv365	chr11:66852591-66879246	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66867800-66880800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:66871600-66884200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:66871800-66880400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr11:66873600-66880400	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr11:66873800-66878400	Weak transcription	Fetal Heart	heart
6	chr11:66873800-66878800	Weak transcription	Right Atrium	heart
7	chr11:66874200-66878400	Weak transcription	Fetal Thymus	thymus
8	chr11:66874600-66878600	Weak transcription	GM12878-XiMat	blood
9	chr11:66875000-66875400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr11:66875000-66875600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr11:66875000-66875600	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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