Variant report
Variant | rs59559400 |
---|---|
Chromosome Location | chr1:179419949-179419950 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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Variant related genes | Relation type |
---|---|
MEF2AP1 | TF binding region |
rs_ID | r2[population] |
---|---|
rs11584680 | 0.87[EUR][1000 genomes] |
rs4111171 | 0.81[EUR][1000 genomes] |
rs4651029 | 0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4651030 | 0.85[EUR][1000 genomes] |
rs4651041 | 0.80[ASN][1000 genomes] |
rs4652400 | 0.87[EUR][1000 genomes] |
rs56275144 | 0.87[ASN][1000 genomes] |
rs6425538 | 0.87[ASN][1000 genomes] |
rs6425557 | 0.98[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs6656056 | 0.91[AFR][1000 genomes];0.97[EUR][1000 genomes] |
rs6657452 | 0.87[EUR][1000 genomes] |
rs6666455 | 0.85[ASN][1000 genomes] |
rs6693527 | 0.90[AFR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs6698526 | 0.96[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs72704417 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs72704467 | 0.80[ASN][1000 genomes] |
rs72719243 | 0.97[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs7521291 | 0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs962428 | 0.87[EUR][1000 genomes] |
rs9660976 | 0.97[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs9726734 | 0.96[EUR][1000 genomes];0.80[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv1819329 | chr1:179371973-179442337 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
2 | nsv466217 | chr1:179371973-179477921 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
3 | nsv548297 | chr1:179371973-179477921 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
4 | nsv548298 | chr1:179376896-179436288 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | n/a |
5 | nsv946523 | chr1:179417249-179426389 | Enhancers Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
SNP | Gene | Cis/trans | Tissue | Source |
---|---|---|---|---|
rs59559400 | TDRD5 | cis | Thyroid | GTEx |
rs59559400 | TDRD5 | cis | Esophagus Mucosa | GTEx |
rs59559400 | TDRD5 | cis | Nerve Tibial | GTEx |
rs59559400 | RP11-545A16.3 | cis | Artery Aorta | GTEx |
rs59559400 | TDRD5 | cis | Artery Tibial | GTEx |
rs59559400 | TDRD5 | cis | Adipose Subcutaneous | GTEx |
rs59559400 | TDRD5 | cis | Artery Aorta | GTEx |
rs59559400 | TDRD5 | cis | lung | GTEx |