Variant report

Variant	rs59573152
Chromosome Location	chr6:147218149-147218150
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs62434837	0.85[AFR][1000 genomes]
rs62434838	0.97[AFR][1000 genomes]
rs62434840	0.97[AFR][1000 genomes]
rs73580241	1.00[AFR][1000 genomes]
rs73580243	1.00[AFR][1000 genomes]
rs73582206	1.00[AFR][1000 genomes]
rs73582207	1.00[AFR][1000 genomes]
rs73582211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73582214	1.00[AFR][1000 genomes]
rs927669	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv442012	chr6:147210681-147219817	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147215000-147219200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:147215200-147219600	Flanking Active TSS	K562	blood
3	chr6:147215200-147224200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:147216000-147224600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:147216800-147220000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr6:147217000-147220400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:147217000-147220400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr6:147217400-147220600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:147217800-147218200	Enhancers	NHLF	lung
10	chr6:147218000-147225800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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