Variant report

Variant	rs73580241
Chromosome Location	chr6:147214597-147214598
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs59573152	1.00[AFR][1000 genomes]
rs62434837	0.85[AFR][1000 genomes]
rs62434838	0.97[AFR][1000 genomes]
rs62434840	0.97[AFR][1000 genomes]
rs73580243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73582206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73582207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73582211	1.00[AFR][1000 genomes]
rs73582214	1.00[AFR][1000 genomes]
rs927669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv442012	chr6:147210681-147219817	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147209400-147215600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:147210000-147215200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:147211800-147214600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:147212000-147215200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:147212000-147215800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr6:147212200-147214600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr6:147212400-147215000	Enhancers	Primary hematopoietic stem cells	blood
8	chr6:147212400-147215000	Enhancers	NHLF	lung
9	chr6:147212600-147215000	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr6:147213000-147214600	Flanking Active TSS	K562	blood
11	chr6:147213000-147214800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:147214200-147214600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:147214200-147214600	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr6:147214400-147216400	Enhancers	Primary hematopoietic stem cells short term culture	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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