Variant report

Variant	rs5959073
Chromosome Location	chrX:80373260-80373261
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10482570	0.86[YRI][hapmap]
rs12387755	1.00[YRI][hapmap]
rs12388406	0.86[YRI][hapmap]
rs12390323	0.86[YRI][hapmap]
rs12391499	0.86[YRI][hapmap]
rs12394353	0.86[YRI][hapmap]
rs5959814	1.00[YRI][hapmap]
rs5959815	1.00[YRI][hapmap]
rs5959817	0.86[YRI][hapmap]
rs5959819	0.86[YRI][hapmap]
rs5959831	0.86[YRI][hapmap]
rs5959832	0.86[YRI][hapmap]
rs5959834	0.86[YRI][hapmap]
rs5959835	0.86[YRI][hapmap]
rs5959836	0.86[YRI][hapmap]
rs5959837	0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754822	chrX:80365094-80852865	Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:80366800-80375400	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chrX:80367400-80375800	Weak transcription	Brain Substantia Nigra	brain
3	chrX:80369000-80375000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chrX:80369400-80375000	Weak transcription	Hela-S3	cervix
5	chrX:80369400-80375200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chrX:80370800-80375400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chrX:80371000-80375000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chrX:80372800-80375600	Weak transcription	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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