Variant report

Variant	rs5959836
Chromosome Location	chrX:80450531-80450532
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10482570	1.00[YRI][hapmap]
rs12387755	0.86[YRI][hapmap]
rs12388406	1.00[YRI][hapmap]
rs12390323	1.00[YRI][hapmap]
rs12391499	1.00[YRI][hapmap]
rs12394353	1.00[YRI][hapmap]
rs5959073	0.86[YRI][hapmap]
rs5959081	0.88[YRI][hapmap]
rs5959814	0.86[YRI][hapmap]
rs5959815	0.86[YRI][hapmap]
rs5959817	1.00[YRI][hapmap]
rs5959818	0.88[YRI][hapmap]
rs5959819	1.00[YRI][hapmap]
rs5959831	1.00[YRI][hapmap]
rs5959832	1.00[YRI][hapmap]
rs5959834	1.00[YRI][hapmap]
rs5959835	1.00[YRI][hapmap]
rs5959837	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754822	chrX:80365094-80852865	Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:80446200-80456600	Weak transcription	Pancreas	Pancrea
2	chrX:80449200-80456400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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