Variant report

Variant	rs5959187
Chromosome Location	chrX:78012579-78012580
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12156912	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521599	chrX:77662439-78124078	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv528728	chrX:77662439-78124078	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv3394349	chrX:77977388-78779139	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:78004800-78013000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chrX:78004800-78014600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chrX:78004800-78024200	Weak transcription	HSMMtube	muscle
4	chrX:78004800-78025000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chrX:78005000-78012800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chrX:78005200-78018400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chrX:78009400-78014200	Weak transcription	Fetal Kidney	kidney
8	chrX:78010600-78013000	Enhancers	Primary B cells from cord blood	blood
9	chrX:78010800-78013000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chrX:78011000-78012600	Weak transcription	Fetal Stomach	stomach
11	chrX:78011400-78013000	Weak transcription	Fetal Muscle Trunk	muscle
12	chrX:78011400-78014200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chrX:78011600-78014400	Weak transcription	Fetal Muscle Leg	muscle
14	chrX:78012200-78012800	Enhancers	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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