Variant report

Variant	rs12156912
Chromosome Location	chrX:78013878-78013879
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2858575	0.82[CEU][hapmap];0.82[JPT][hapmap]
rs5912637	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs5912638	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs5959187	1.00[CEU][hapmap]
rs5959190	0.82[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521599	chrX:77662439-78124078	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv528728	chrX:77662439-78124078	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv3394349	chrX:77977388-78779139	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:78004800-78014600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chrX:78004800-78024200	Weak transcription	HSMMtube	muscle
3	chrX:78004800-78025000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chrX:78005200-78018400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chrX:78009400-78014200	Weak transcription	Fetal Kidney	kidney
6	chrX:78011400-78014200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chrX:78011600-78014400	Weak transcription	Fetal Muscle Leg	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links