Variant report

Variant	rs2858575
Chromosome Location	chrX:78203241-78203242
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12156912	0.82[CEU][hapmap];0.82[JPT][hapmap]
rs5912637	0.82[JPT][hapmap]
rs5912638	0.82[JPT][hapmap]
rs5959190	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394349	chrX:77977388-78779139	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:78197600-78205200	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chrX:78200200-78203800	Active TSS	Primary B cells from cord blood	blood
3	chrX:78200200-78204200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
4	chrX:78200400-78205200	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
5	chrX:78200600-78203800	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
6	chrX:78200600-78204200	Active TSS	Primary T helper naive cells from peripheral blood	blood
7	chrX:78200600-78204600	Active TSS	Primary T helper cells PMA-I stimulated	--
8	chrX:78200600-78205200	Active TSS	Primary T cells fromperipheralblood	blood
9	chrX:78200600-78205400	Active TSS	Primary T regulatory cells fromperipheralblood	blood
10	chrX:78200800-78203600	Active TSS	Rectal Mucosa Donor 29	rectum
11	chrX:78200800-78204800	Active TSS	Primary T killer memory cells from peripheral blood	blood
12	chrX:78200800-78205000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
13	chrX:78200800-78205000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chrX:78200800-78205200	Active TSS	Primary B cells from peripheral blood	blood
15	chrX:78200800-78205200	Active TSS	GM12878-XiMat	blood
16	chrX:78201200-78203800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chrX:78201200-78205000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chrX:78201200-78206000	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chrX:78201800-78205600	Weak transcription	Dnd41	blood
20	chrX:78202000-78205000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chrX:78202000-78205400	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
22	chrX:78202200-78203400	Active TSS	Primary T cells from cord blood	blood
23	chrX:78202400-78204000	Active TSS	Primary T helper cells fromperipheralblood	blood
24	chrX:78202400-78213600	Weak transcription	Fetal Thymus	thymus
25	chrX:78202600-78203400	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chrX:78202800-78204400	Weak transcription	Primary hematopoietic stem cells	blood
27	chrX:78202800-78205400	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
28	chrX:78203000-78203600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood

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