Variant report

Variant	rs5912637
Chromosome Location	chrX:78007438-78007439
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12156912	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2858575	0.82[JPT][hapmap]
rs5912638	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs5959190	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521599	chrX:77662439-78124078	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv528728	chrX:77662439-78124078	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv3394349	chrX:77977388-78779139	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:78004400-78010200	Weak transcription	Fetal Stomach	stomach
2	chrX:78004800-78009400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chrX:78004800-78013000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chrX:78004800-78014600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chrX:78004800-78024200	Weak transcription	HSMMtube	muscle
6	chrX:78004800-78025000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chrX:78005000-78008200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chrX:78005000-78012800	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chrX:78005200-78018400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chrX:78005400-78010600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chrX:78005600-78008400	Weak transcription	Fetal Muscle Leg	muscle
12	chrX:78005600-78010200	Weak transcription	Fetal Muscle Trunk	muscle
13	chrX:78006000-78012200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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