Variant report

Variant	rs5959841
Chromosome Location	chrX:80456391-80456392
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12387934	1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs1954611	0.85[YRI][hapmap]
rs2337002	0.85[YRI][hapmap]
rs5959081	0.81[ASW][hapmap]
rs5959825	1.00[MKK][hapmap];1.00[YRI][hapmap]
rs5959838	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754822	chrX:80365094-80852865	Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:80446200-80456600	Weak transcription	Pancreas	Pancrea
2	chrX:80449200-80456400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chrX:80453800-80456600	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chrX:80456200-80456400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chrX:80456200-80456400	Enhancers	Dnd41	blood
6	chrX:80456200-80456400	Enhancers	Monocytes-CD14+_RO01746	blood
7	chrX:80456200-80456800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chrX:80456200-80459400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chrX:80456200-80459400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links