Variant report

Variant	rs1954611
Chromosome Location	chrX:80378320-80378321
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12387934	0.85[YRI][hapmap]
rs12389790	0.91[ASW][hapmap];0.84[JPT][hapmap];0.84[YRI][hapmap]
rs1372756	0.84[JPT][hapmap]
rs1372757	0.84[JPT][hapmap]
rs1538351	0.92[JPT][hapmap];0.86[YRI][hapmap]
rs2027279	0.84[JPT][hapmap]
rs2039717	0.84[JPT][hapmap]
rs2337002	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs5959087	0.84[JPT][hapmap]
rs5959088	0.83[JPT][hapmap]
rs5959825	0.85[YRI][hapmap]
rs5959838	0.85[YRI][hapmap]
rs5959841	0.85[YRI][hapmap]
rs5959857	0.84[JPT][hapmap]
rs6616729	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754822	chrX:80365094-80852865	Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links