Variant report

Variant	rs1538351
Chromosome Location	chrX:80470107-80470108
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12389790	1.00[CHB][hapmap];0.92[JPT][hapmap];0.92[YRI][hapmap]
rs1372756	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs1372757	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs1954611	0.92[JPT][hapmap];0.86[YRI][hapmap]
rs2027279	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs2039717	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs2337002	0.84[JPT][hapmap];0.86[YRI][hapmap]
rs5959087	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs5959088	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs5959857	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs6616729	1.00[CHB][hapmap];0.93[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754822	chrX:80365094-80852865	Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:80458600-80474600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chrX:80459200-80484800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chrX:80459200-80492800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chrX:80459400-80474800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chrX:80459400-80503800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chrX:80459600-80471000	Weak transcription	Adipose Nuclei	Adipose
7	chrX:80459600-80474600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chrX:80459600-80485000	Weak transcription	Fetal Stomach	stomach
9	chrX:80459600-80490000	Weak transcription	Primary hematopoietic stem cells	blood
10	chrX:80459600-80492400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chrX:80459600-80496800	Weak transcription	Primary B cells from cord blood	blood
12	chrX:80459600-80497000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chrX:80460000-80470800	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chrX:80460000-80493400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chrX:80460600-80492000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chrX:80462200-80479200	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chrX:80462400-80475200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chrX:80462400-80476000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chrX:80463000-80470800	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chrX:80463000-80475000	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chrX:80465600-80491600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chrX:80466400-80470400	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chrX:80466800-80484600	Weak transcription	Duodenum Mucosa	Duodenum
24	chrX:80468000-80492600	Weak transcription	Primary B cells from peripheral blood	blood
25	chrX:80469400-80471400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chrX:80469400-80497200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chrX:80470000-80470800	Weak transcription	Rectal Smooth Muscle	rectum
28	chrX:80470000-80471000	Weak transcription	Primary neutrophils fromperipheralblood	blood

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