Variant report

Variant	rs12389790
Chromosome Location	chrX:80505985-80505986
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1372756	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs1372757	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs1538351	1.00[CHB][hapmap];0.92[JPT][hapmap];0.92[YRI][hapmap]
rs1954611	0.91[ASW][hapmap];0.84[JPT][hapmap];0.84[YRI][hapmap]
rs2027279	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs2039717	0.86[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap]
rs2337002	0.91[ASW][hapmap];0.84[YRI][hapmap]
rs5959087	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs5959088	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5959857	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5959860	1.00[CEU][hapmap];0.84[JPT][hapmap]
rs6524053	1.00[CEU][hapmap]
rs6616729	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754822	chrX:80365094-80852865	Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:80494200-80523000	Weak transcription	Gastric	stomach
2	chrX:80495000-80513400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chrX:80496200-80518400	Weak transcription	Pancreas	Pancrea
4	chrX:80497400-80534400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chrX:80497600-80507200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chrX:80497600-80509200	Weak transcription	Fetal Stomach	stomach
7	chrX:80497600-80509600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chrX:80497600-80513200	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chrX:80497600-80514200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chrX:80497800-80525800	Weak transcription	Primary B cells from peripheral blood	blood
11	chrX:80501800-80526000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chrX:80504400-80514000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chrX:80504400-80514000	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chrX:80504400-80514200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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