Variant report

Variant	rs59601972
Chromosome Location	chr9:110412047-110412048
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10118690	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10118715	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10122515	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10978967	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10978972	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12335820	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12347467	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7040614	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7868809	0.89[EUR][1000 genomes]
rs7870762	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv831683	chr9:110275212-110461288	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv893700	chr9:110365337-110451516	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110407800-110412200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr9:110408000-110415400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr9:110409800-110413200	Enhancers	HSMM	muscle
4	chr9:110410000-110413200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr9:110410600-110412600	Weak transcription	Fetal Muscle Leg	muscle
6	chr9:110410800-110412400	Weak transcription	HSMMtube	muscle
7	chr9:110410800-110412600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr9:110411000-110412400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:110412000-110413000	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr9:110412000-110413200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr9:110412000-110413600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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