Variant report

Variant	rs7870762
Chromosome Location	chr9:110410761-110410762
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10118690	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10118715	0.91[CEU][hapmap];0.84[CHD][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10122515	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10978967	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10978972	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11789505	0.82[CEU][hapmap]
rs12335820	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12347467	0.91[CEU][hapmap];0.91[EUR][1000 genomes]
rs59601972	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7040614	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7864185	0.91[CEU][hapmap];0.87[CHD][hapmap];0.87[MEX][hapmap]
rs7868809	0.91[CEU][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv831683	chr9:110275212-110461288	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv893700	chr9:110365337-110451516	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv528269	chr9:110402957-110410888	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110407800-110412200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr9:110408000-110415400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr9:110408200-110412000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr9:110409600-110411600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr9:110409800-110413200	Enhancers	HSMM	muscle
6	chr9:110410000-110413200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:110410200-110410800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr9:110410200-110410800	Enhancers	HSMMtube	muscle
9	chr9:110410200-110411000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:110410200-110411600	Enhancers	Muscle Satellite Cultured Cells	--
11	chr9:110410400-110410800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
12	chr9:110410400-110411000	Enhancers	Fetal Kidney	kidney
13	chr9:110410400-110411000	Enhancers	Stomach Mucosa	stomach
14	chr9:110410600-110411000	Flanking Active TSS	NHDF-Ad	bronchial
15	chr9:110410600-110412600	Weak transcription	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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