Variant report

Variant	rs59602937
Chromosome Location	chr8:119541177-119541178
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs58568813	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61505196	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7002279	1.00[AMR][1000 genomes]
rs73708335	1.00[AMR][1000 genomes]
rs73708336	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73708722	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73708803	1.00[AMR][1000 genomes]
rs73708816	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73708817	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032681	chr8:119153316-119609948	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv539737	chr8:119153316-119609948	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv831443	chr8:119390590-119590662	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119539000-119541200	Weak transcription	GM12878-XiMat	blood
2	chr8:119539200-119542600	Weak transcription	Stomach Mucosa	stomach
3	chr8:119539800-119541800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr8:119540200-119541400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr8:119540800-119542600	Enhancers	Primary B cells from peripheral blood	blood
6	chr8:119541000-119541200	Enhancers	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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