Variant report

Variant	rs73708336
Chromosome Location	chr8:119500925-119500926
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs58568813	1.00[AMR][1000 genomes]
rs59602937	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61505196	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7002279	1.00[AMR][1000 genomes]
rs73708335	1.00[AMR][1000 genomes]
rs73708722	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73708803	1.00[AMR][1000 genomes]
rs73708816	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73708817	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032681	chr8:119153316-119609948	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv539737	chr8:119153316-119609948	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv831443	chr8:119390590-119590662	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119499000-119501000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr8:119499200-119502600	Enhancers	Osteobl	bone
3	chr8:119499200-119504000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr8:119499600-119502400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr8:119499600-119507400	Weak transcription	HSMMtube	muscle
6	chr8:119499800-119501000	Weak transcription	HUVEC	blood vessel
7	chr8:119499800-119501400	Weak transcription	HSMM	muscle
8	chr8:119499800-119502200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:119499800-119503600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr8:119500000-119501400	Weak transcription	NH-A	brain
11	chr8:119500000-119503200	Weak transcription	NHLF	lung
12	chr8:119500000-119505000	Enhancers	NHDF-Ad	bronchial
13	chr8:119500400-119501600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr8:119500600-119501400	Enhancers	Hela-S3	cervix
15	chr8:119500600-119505200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr8:119500800-119501200	Enhancers	GM12878-XiMat	blood
17	chr8:119500800-119501400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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