Variant report

Variant	rs59613460
Chromosome Location	chr6:37058300-37058301
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37055918..37058641-chr6:37136878..37140744,5	K562	blood:

Variant related genes	Relation type
ENSG00000137193	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs6912088	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6918055	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6918118	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6934536	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6941432	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9357237	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9357238	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9357239	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9366928	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv969392	chr6:37052594-37060796	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37045800-37060800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:37051400-37060400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr6:37051600-37060600	Weak transcription	A549	lung
4	chr6:37051600-37063400	Weak transcription	Small Intestine	intestine
5	chr6:37051800-37059000	Weak transcription	Hela-S3	cervix
6	chr6:37051800-37060600	Weak transcription	Pancreas	Pancrea
7	chr6:37052200-37060600	Weak transcription	Adipose Nuclei	Adipose
8	chr6:37052200-37070000	Weak transcription	Right Atrium	heart
9	chr6:37052800-37069800	Weak transcription	Ovary	ovary
10	chr6:37053200-37060400	Weak transcription	Fetal Intestine Small	intestine
11	chr6:37054200-37059000	Weak transcription	Placenta	Placenta
12	chr6:37057000-37060400	Weak transcription	Fetal Intestine Large	intestine
13	chr6:37057400-37059400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:37057600-37059000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:37057600-37060400	Weak transcription	Fetal Stomach	stomach
16	chr6:37057800-37059600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:37057800-37060600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr6:37057800-37061400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr6:37058000-37059200	Weak transcription	K562	blood
20	chr6:37058000-37069000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:37058200-37058600	Weak transcription	HepG2	liver

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