Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr6:37056567-37057053	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37056453..37058163-chr6:37061494..37063328,2	K562	blood:
2	chr6:37055918..37058641-chr6:37136878..37140744,5	K562	blood:

Variant related genes	Relation type
RPL12P2	TF binding region
ENSG00000137193	Chromatin interaction

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs59613460	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6912088	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6918055	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6918118	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6941432	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs913499	0.88[JPT][hapmap]
rs9357237	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9357238	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9357239	0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9366928	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv969392	chr6:37052594-37060796	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37045800-37060800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:37051400-37060400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr6:37051600-37060600	Weak transcription	A549	lung
4	chr6:37051600-37063400	Weak transcription	Small Intestine	intestine
5	chr6:37051800-37059000	Weak transcription	Hela-S3	cervix
6	chr6:37051800-37060600	Weak transcription	Pancreas	Pancrea
7	chr6:37052200-37060600	Weak transcription	Adipose Nuclei	Adipose
8	chr6:37052200-37070000	Weak transcription	Right Atrium	heart
9	chr6:37052800-37069800	Weak transcription	Ovary	ovary
10	chr6:37053200-37060400	Weak transcription	Fetal Intestine Small	intestine
11	chr6:37054200-37059000	Weak transcription	Placenta	Placenta
12	chr6:37055400-37057800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:37055600-37058200	Enhancers	HepG2	liver
14	chr6:37056400-37057400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:37056400-37057600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:37056400-37058000	Enhancers	K562	blood
17	chr6:37056600-37057600	Enhancers	Fetal Stomach	stomach
18	chr6:37056600-37057800	Enhancers	NHDF-Ad	bronchial
19	chr6:37056600-37057800	Enhancers	NHLF	lung
20	chr6:37056600-37058000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr6:37057000-37060400	Weak transcription	Fetal Intestine Large	intestine

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