Variant report

Variant	rs59620547
Chromosome Location	chr14:78660896-78660897
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11159337	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12100630	0.82[AMR][1000 genomes]
rs17107085	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17107112	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28570598	0.81[ASN][1000 genomes]
rs28644780	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4903718	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4903721	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4903722	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72683751	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72683755	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs741488	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1366	chr14:78633044-78677718	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78659200-78666000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:78659600-78664200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr14:78660200-78663000	Enhancers	Brain Germinal Matrix	brain
4	chr14:78660600-78661600	Enhancers	Fetal Thymus	thymus
5	chr14:78660800-78661000	Enhancers	Thymus	Thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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