Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10146353	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12100630	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17107085	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17107112	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28570598	0.89[ASN][1000 genomes]
rs28644780	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4903713	0.84[ASN][1000 genomes]
rs4903714	0.84[ASN][1000 genomes]
rs4903718	0.96[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4903721	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4903722	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59620547	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7144274	0.83[ASN][1000 genomes]
rs7153461	0.82[ASN][1000 genomes]
rs72681710	0.84[ASN][1000 genomes]
rs72681715	0.87[EUR][1000 genomes]
rs72681717	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72683751	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72683755	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs741488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8016646	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1366	chr14:78633044-78677718	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1038627	chr14:78635498-78657912	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78641000-78647800	Weak transcription	Fetal Brain Male	brain
2	chr14:78643600-78646000	Enhancers	Brain Germinal Matrix	brain
3	chr14:78644200-78645600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:78644400-78645600	Enhancers	Brain Angular Gyrus	brain
5	chr14:78644600-78644800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
6	chr14:78644600-78645000	Weak transcription	Brain Anterior Caudate	brain
7	chr14:78644600-78645600	Enhancers	Brain Inferior Temporal Lobe	brain

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