Variant report

Variant	rs7153461
Chromosome Location	chr14:78632130-78632131
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10146353	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11159337	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs17107085	0.86[JPT][hapmap]
rs28570598	0.83[ASN][1000 genomes]
rs28644780	0.84[ASN][1000 genomes]
rs4903716	0.95[AFR][1000 genomes]
rs4903718	0.81[JPT][hapmap]
rs4903721	0.85[ASN][1000 genomes]
rs4903722	0.85[ASN][1000 genomes]
rs72681715	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs72681717	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs741488	0.84[ASN][1000 genomes]
rs8016646	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902109	chr14:78603877-78634174	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv520241	chr14:78623134-78634174	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78624600-78635800	Weak transcription	Brain Germinal Matrix	brain
2	chr14:78629800-78632400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr14:78630800-78636400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr14:78630800-78636800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr14:78631000-78635800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr14:78631000-78636400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr14:78631000-78636400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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