Variant report

Variant	rs59620776
Chromosome Location	chr4:15660184-15660185
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:15660072-15660207	MCF-7	breast:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:15651703..15660794-chr4:15677607..15686235,25	K562	blood:
2	chr4:15649873..15653235-chr4:15657425..15660766,3	MCF-7	breast:
3	chr4:15650206..15660298-chr4:15677140..15687517,25	K562	blood:
4	chr4:15654775..15659231-chr4:15659761..15666940,9	K562	blood:
5	chr4:15659126..15661222-chr4:15677719..15679356,2	MCF-7	breast:
6	chr4:15652688..15657004-chr4:15659488..15663550,8	K562	blood:

No data

Variant related genes	Relation type
FBXL5	TF binding region
ENSG00000118564	Chromatin interaction
ENSG00000237765	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2069000	1.00[EUR][1000 genomes]
rs2302468	1.00[EUR][1000 genomes]
rs60094906	1.00[EUR][1000 genomes]
rs60938249	0.86[EUR][1000 genomes]
rs61336856	1.00[EUR][1000 genomes]
rs73115627	0.86[EUR][1000 genomes]
rs73115630	1.00[EUR][1000 genomes]
rs73121376	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv428439	chr4:15556961-15749520	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv518830	chr4:15610771-15672200	Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv521183	chr4:15610771-15692136	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15657200-15662200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
2	chr4:15657600-15681400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr4:15657800-15661400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr4:15657800-15666800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:15657800-15667800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr4:15658000-15660600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
7	chr4:15658000-15661400	Weak transcription	Placenta	Placenta
8	chr4:15658000-15664600	Weak transcription	Esophagus	oesophagus
9	chr4:15658000-15665400	Weak transcription	Psoas Muscle	Psoas
10	chr4:15658000-15666800	Weak transcription	Thymus	Thymus
11	chr4:15658000-15667400	Weak transcription	Fetal Muscle Leg	muscle
12	chr4:15658000-15667800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr4:15658000-15672200	Weak transcription	Fetal Muscle Trunk	muscle
14	chr4:15658000-15673800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr4:15658000-15675200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:15658000-15679000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr4:15658000-15681400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr4:15658200-15660200	Enhancers	Fetal Lung	lung
19	chr4:15658200-15660400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr4:15658200-15661000	Weak transcription	Fetal Heart	heart
21	chr4:15658200-15661200	Weak transcription	Liver	Liver
22	chr4:15658200-15661600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr4:15658200-15661800	Active TSS	Primary B cells from cord blood	blood
24	chr4:15658200-15665000	Weak transcription	GM12878-XiMat	blood
25	chr4:15658200-15666600	Weak transcription	HUVEC	blood vessel
26	chr4:15658200-15666800	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr4:15658200-15667200	Weak transcription	Fetal Thymus	thymus
28	chr4:15658200-15667400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr4:15658200-15667400	Weak transcription	NH-A	brain
30	chr4:15658200-15667800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr4:15658200-15667800	Weak transcription	NHLF	lung
32	chr4:15658200-15668000	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr4:15658200-15670600	Weak transcription	Brain Cingulate Gyrus	brain
34	chr4:15658200-15679200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr4:15658200-15679200	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr4:15658200-15682200	Weak transcription	Fetal Stomach	stomach
37	chr4:15658400-15660200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr4:15658400-15660800	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr4:15658400-15660800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr4:15658400-15661200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr4:15658400-15661400	Active TSS	Primary hematopoietic stem cells	blood
42	chr4:15658400-15661400	Weak transcription	NHEK	skin
43	chr4:15658400-15662600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
44	chr4:15658400-15667000	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr4:15658400-15667400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr4:15658400-15668400	Weak transcription	Dnd41	blood
47	chr4:15658400-15668600	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr4:15658600-15660600	Strong transcription	HMEC	breast
49	chr4:15658600-15673000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr4:15658600-15679000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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