Variant report

Variant	rs73115627
Chromosome Location	chr4:15708767-15708768
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr4:15708679-15708844	MCF10A-Er-Src	breast:	n/a	n/a
2	CEBPB	chr4:15708646-15709191	IMR90	lung:	n/a	chr4:15709046-15709057 chr4:15709046-15709057 chr4:15709044-15709055
3	CEBPB	chr4:15708746-15709372	Hela-S3	cervix:	n/a	chr4:15709046-15709057 chr4:15709046-15709057 chr4:15709044-15709055

Variant related genes	Relation type
BST1	TF binding region

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2069000	0.86[EUR][1000 genomes]
rs2302468	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59620776	0.86[EUR][1000 genomes]
rs60094906	0.86[EUR][1000 genomes]
rs61336856	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73115630	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73121376	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv428439	chr4:15556961-15749520	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15697600-15723600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:15705000-15735200	Weak transcription	Lung	lung
3	chr4:15705200-15716200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr4:15705200-15716200	Weak transcription	Brain Anterior Caudate	brain
5	chr4:15705200-15720400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr4:15705200-15720600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr4:15705200-15731000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr4:15705400-15708800	Weak transcription	Brain Angular Gyrus	brain
9	chr4:15705400-15708800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr4:15705400-15709200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr4:15705400-15709600	Weak transcription	Fetal Intestine Small	intestine
12	chr4:15705400-15713800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr4:15705400-15715800	Weak transcription	Fetal Lung	lung
14	chr4:15705400-15715800	Weak transcription	Fetal Stomach	stomach
15	chr4:15705400-15715800	Weak transcription	NH-A	brain
16	chr4:15705400-15716200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr4:15705400-15716200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr4:15705400-15716200	Weak transcription	A549	lung
19	chr4:15705400-15718800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr4:15705400-15727400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr4:15705600-15714000	Weak transcription	Duodenum Mucosa	Duodenum
22	chr4:15705800-15715600	Weak transcription	Osteobl	bone
23	chr4:15705800-15716200	Weak transcription	Fetal Intestine Large	intestine
24	chr4:15705800-15719400	Weak transcription	Spleen	Spleen
25	chr4:15706000-15727800	Weak transcription	Primary hematopoietic stem cells	blood
26	chr4:15706600-15709000	Enhancers	HepG2	liver
27	chr4:15706600-15709200	Genic enhancers	Primary monocytes fromperipheralblood	blood
28	chr4:15706800-15708800	Genic enhancers	Monocytes-CD14+_RO01746	blood
29	chr4:15706800-15709400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr4:15706800-15710000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr4:15707400-15708800	Weak transcription	Brain Substantia Nigra	brain
32	chr4:15707400-15709800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr4:15707400-15711000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr4:15707400-15711800	Genic enhancers	Primary neutrophils fromperipheralblood	blood
35	chr4:15707400-15742800	Weak transcription	Primary B cells from cord blood	blood
36	chr4:15707600-15709400	Enhancers	Adipose Nuclei	Adipose
37	chr4:15708000-15709200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr4:15708000-15716200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr4:15708200-15709200	Enhancers	Fetal Heart	heart
40	chr4:15708200-15709400	Enhancers	NHDF-Ad	bronchial
41	chr4:15708200-15710000	Enhancers	Hela-S3	cervix
42	chr4:15708400-15708800	Enhancers	Ovary	ovary
43	chr4:15708400-15709000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr4:15708400-15709000	Enhancers	HSMMtube	muscle
45	chr4:15708400-15709400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr4:15708400-15709400	Enhancers	Brain Hippocampus Middle	brain
47	chr4:15708600-15709000	Enhancers	Fetal Brain Female	brain
48	chr4:15708600-15709200	Enhancers	Liver	Liver

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